Volume 7; Issue 4 Suppleme

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BMC Bioinformatics
Volume 7; Issue 4 Suppleme

BMC Bioinformatics

Volume 7; Issue 4 Suppleme

1

Development of computations in bioscience and bioinformatics and its application: review of the Symposium of Computations in Bioinformatics and Bioscience (SCBB06)

Youping Deng, Jun Ni, Chaoyang Zhang

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 208 KB

english, 2006

2

SEQOPTICS: a protein sequence clustering system

Yonghui Chen, Kevin D Reilly, Alan P Sprague, Zhijie Guan

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 462 KB

english, 2006

3

The relationship between protein sequences and their gene ontology functions

Zhong-Hui Duan, Brent Hughes, Lothar Reichel, Dianne M Perez, Ting Shi

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 316 KB

english, 2006

4

Towards a better solution to the shortest common supersequence problem: the deposition and reduction algorithm

Kang Ning, Hon Wai Leong

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 295 KB

english, 2006

5

Determination of the minimum number of microarray experiments for discovery of gene expression patterns

Fang-Xiang Wu, WJ Zhang, Anthony J Kusalik

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 270 KB

english, 2006

6

Improved Chou-Fasman method for protein secondary structure prediction

Hang Chen, Fei Gu, Zhengge Huang

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 501 KB

english, 2006

7

Parallelization of multicategory support vector machines (PMC-SVM) for classifying microarray data

Chaoyang Zhang, Peng Li, Arun Rajendran, Youping Deng, Dequan Chen

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 269 KB

english, 2006

8

Identification of new members of hydrophobin family using primary structure analysis

Kuan Yang, Youping Deng, Chaoyang Zhang, Mohamed Elasri

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 384 KB

english, 2006

9

Evaluation of clustering algorithms for gene expression data

Susmita Datta, Somnath Datta

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 249 KB

english, 2006

10

GenomeBlast: a web tool for small genome comparison

Guoqing Lu, Liying Jiang, Resa MK Helikar, Thaine W Rowley, Luwen Zhang, Xianfeng Chen, Etsuko N Moriyama

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 525 KB

english, 2006

11

Frequency distribution of TATA Box and extension sequences on human promoters

Wei Shi, Wanlei Zhou

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 543 KB

english, 2006

12

Particle simulation approach for subcellular dynamics and interactions of biological molecules

Ryuzo Azuma, Tetsuji Kitagawa, Hiroshi Kobayashi, Akihiko Konagaya

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.59 MB

english, 2006

13

Combining comparative genomics withde novomotif discovery to identify human transcription factor DNA-binding motifs

Linyong Mao, W Jim Zheng

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 247 KB

english, 2006

14

Comparison of transcriptional responses in liver tissue and primary hepatocyte cell cultures after exposure to hexahydro-1, 3, 5-trinitro-1, 3, 5-triazine

Edward J Perkins, Wenjun Bao, Xin Guan, Choo-Yaw Ang, Russell D Wolfinger, Tzu-Ming Chu, Sharon A Meyer, Laura S Inouye

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 459 KB

english, 2006

15

Systematic gene function prediction from gene expression data by using a fuzzy nearest-cluster method

Xiao-Li Li, Yin-Chet Tan, See-Kiong Ng

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 321 KB

english, 2006

16

A novel approach to phylogenetic tree construction using stochastic optimization and clustering

Ling Qin, Yixin Chen, Yi Pan, Ling Chen

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 312 KB

english, 2006

17

SVM Classifier – a comprehensive java interface for support vector machine classification of microarray data

Mehdi Pirooznia, Youping Deng

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 403 KB

english, 2006

18

AffyMiner: mining differentially expressed genes and biological knowledge in GeneChip microarray data

Guoqing Lu, The V Nguyen, Yuannan Xia, Michael Fromm

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.01 MB

english, 2006

19

In silicomodelling of hormone response elements

Maria Stepanova, Feng Lin, Valerie C-L Lin

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 322 KB

english, 2006

20

An improved ant colony algorithm with diversified solutions based on the immune strategy

Ling Qin, Yi Pan, Ling Chen, Yixin Chen

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 258 KB

english, 2006

21

A fast parallel algorithm for finding the longest common sequence of multiple biosequences

Yixin Chen, Andrew Wan, Wei Liu

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 328 KB

english, 2006

22

Estimate haplotype frequencies in pedigrees

Qiangfeng Zhang, Yuzhong Zhao, Guoliang Chen, Yun Xu

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 316 KB

english, 2006

23

Maximum common subgraph: some upper bound and lower bound results

Xiuzhen Huang, Jing Lai, Steven F Jennings

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 264 KB

english, 2006

24

FM-test: a fuzzy-set-theory-based approach to differential gene expression data analysis

Lily R Liang, Shiyong Lu, Xuena Wang, Yi Lu, Vinay Mandal, Dorrelyn Patacsil, Deepak Kumar

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 353 KB

english, 2006

25

The impact of sample imbalance on identifying differentially expressed genes

Kun Yang, Jianzhong Li, Hong Gao

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 380 KB

english, 2006

26

Degenerated primer design to amplify the heavy chain variable region from immunoglobulin cDNA

Ying Wang, Wei Chen, Xu Li, Bing Cheng

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 246 KB

english, 2006

27

Clustering of gene expression data: performance and similarity analysis

Longde Yin, Chun-Hsi Huang, Jun Ni

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 329 KB

english, 2006